PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00059.1.g00540.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LSD

Protein Properties

Length: 76aa MW: 8346.85 Da PI: 7.7362

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00059.1.g00540.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	31.3	3.4e-10	8	32	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrt+L+ P GAp RCa+C tV Zjn_sc00059.1.g00540.1.sm.mkhc 8 CSGCRTPLQLPHGAPCLRCAICGTV 32 ************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57889	6.8E-5	5	42	No hit	No description
TIGRFAMs	TIGR01053	2.3E-13	5	34	IPR005735	Zinc finger, LSD1-type
Gene3D	G3DSA:3.30.60.20	5.6E-5	7	38	No hit	No description
Pfam	PF06943	4.5E-9	8	32	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MTMMLIDCSG CRTPLQLPHG APCLRCAICG TVTHLKCPVY IHKGADNMYG KITGRDLDPQ 60 LTACDQFDVY AKPFSL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP394	2	2