PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00060.1.g00520.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 927aa MW: 104991 Da PI: 8.2602

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00060.1.g00520.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.3	1.1e-22	54	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 Y++Y++++GFsvrk k+++ +++i +++++Cskeg + +e + +++ +r+ trt+Cka+++ + +++g+w v++ Zjn_sc00060.1.g00520.1.sm.mkhc 54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIR 130 7******************9***************99988..9999*********************** PP FAR1 81 leleHnHela 90 ++ eHnH+la Zjn_sc00060.1.g00520.1.sm.mkhc 131 FVPEHNHQLA 140 ******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-20	54	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-33	262	355	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.287	540	578	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.7E-8	543	575	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-7	553	580	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence Send to blast
MEGTQVSQEQ RLQIRDNGEA AEKAGDYGNA LSRKEVTEEL LGCVVHSEEE AYRLYCDYGH 60 RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV 120 DEKGRWTVIR FVPEHNHQLA KPGERHMLRS AKSLAVGKSG VIDPSASTES HQINGLSDMI 180 EGDVSENPEY TIRDCYNQVS MQGITIIDAG DSQSLVSYFK RRTNEEGMFY WDVQVDQEGR 240 MTNFFYRDGK SRNDYDCFGD AVIFDTTYRT NKYNLICATF VGVDHHWQNV VFGCAFLLDE 300 SVASYVWLFK SFLESMGGRS PRSIFTDQDE AIMQAIEQVF PNTQHCFSYW HILKNAQSHL 360 GALNTSQAFQ NMFMKCMQGS DSEEDLEKSW TEILHEYKLH DNSWLIDLYR FRYKWCSAFN 420 KDTFDGGINS SQWGEVSNNI LNGISDESTS LTRFALLLEK VIKLLRRHES EEDFRCSQTA 480 PVRAVKHSTV LKQAAESYTH RIYKLFEAEF LDGCGATSCY ETSSGGNLLR YEITMQGRGS 540 KVWVALDTST MEITCSCRKF ERMGILCSHA LKAFSLQNVD TIPEKYILKR WTKDARRSVY 600 KLGQDDSTQQ ECTEAELAYR NRAMQYAYNL IMKSQELEES RKTFWDSLET GEKALEVFFE 660 MRDLRTQAAK DANKKEKRKK KPSKGPILID QMPSEIKPEV ERKGQSGYGS SELLSDYRGS 720 AVEPGGTAQQ ARRTRGDGAS QIQDGAAGGA EIWARAAGWQ LRVAEGSVAA AGEKNRDRRG 780 AATGGGRRGD IRSEEGAPVS TGASSAASVE RRGLCRGRKG ECGSRRRRWE PGREGTVVRR 840 RARTEADRRT ERQHRRMKIR RLKRASPPDE TFERRSWCNT KAAAHGVGVL GDGSRGLAVG 900 GPCCGVSSAD DRSADTRTIQ IPRTDWS

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence Send to blast

MEGTQVSQEQ RLQIRDNGEA AEKAGDYGNA LSRKEVTEEL LGCVVHSEEE AYRLYCDYGH  60
RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV  120
DEKGRWTVIR FVPEHNHQLA KPGERHMLRS AKSLAVGKSG VIDPSASTES HQINGLSDMI  180
EGDVSENPEY TIRDCYNQVS MQGITIIDAG DSQSLVSYFK RRTNEEGMFY WDVQVDQEGR  240
MTNFFYRDGK SRNDYDCFGD AVIFDTTYRT NKYNLICATF VGVDHHWQNV VFGCAFLLDE  300
SVASYVWLFK SFLESMGGRS PRSIFTDQDE AIMQAIEQVF PNTQHCFSYW HILKNAQSHL  360
GALNTSQAFQ NMFMKCMQGS DSEEDLEKSW TEILHEYKLH DNSWLIDLYR FRYKWCSAFN  420
KDTFDGGINS SQWGEVSNNI LNGISDESTS LTRFALLLEK VIKLLRRHES EEDFRCSQTA  480
PVRAVKHSTV LKQAAESYTH RIYKLFEAEF LDGCGATSCY ETSSGGNLLR YEITMQGRGS  540
KVWVALDTST MEITCSCRKF ERMGILCSHA LKAFSLQNVD TIPEKYILKR WTKDARRSVY  600
KLGQDDSTQQ ECTEAELAYR NRAMQYAYNL IMKSQELEES RKTFWDSLET GEKALEVFFE  660
MRDLRTQAAK DANKKEKRKK KPSKGPILID QMPSEIKPEV ERKGQSGYGS SELLSDYRGS  720
AVEPGGTAQQ ARRTRGDGAS QIQDGAAGGA EIWARAAGWQ LRVAEGSVAA AGEKNRDRRG  780
AATGGGRRGD IRSEEGAPVS TGASSAASVE RRGLCRGRKG ECGSRRRRWE PGREGTVVRR  840
RARTEADRRT ERQHRRMKIR RLKRASPPDE TFERRSWCNT KAAAHGVGVL GDGSRGLAVG  900
GPCCGVSSAD DRSADTRTIQ IPRTDWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	838	862	RRRARTEADRRTERQHRRMKIRRLK
2	847	861	RRTERQHRRMKIRRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801012.1	0.0	protein FAR1-RELATED SEQUENCE 9-like isoform X1
Refseq	XP_025801013.1	0.0	protein FAR1-RELATED SEQUENCE 9-like isoform X1
Refseq	XP_025801016.1	0.0	protein FAR1-RELATED SEQUENCE 9-like isoform X4
TrEMBL	A0A2T8KRX9	0.0	A0A2T8KRX9_9POAL; Uncharacterized protein
STRING	Pavir.Bb02863.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-100	FAR1-related sequence 5