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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zjn_sc00060.1.g01280.1.am.mk | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 191aa MW: 19904.3 Da PI: 7.9325 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 25.9 | 3.3e-08 | 82 | 118 | 55 | 90 |
FAR1 55 raetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
+ +rtgC a+l++k+ + ++vt++ +eHnH+la
Zjn_sc00060.1.g01280.1.am.mk 82 CPDSRTGCLASLTIKLIPsANAFRVTDFTTEHNHPLA 118
5679*************9999**************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.6E-5 | 82 | 118 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 191 aa Download sequence Send to blast |
MSTAPDLSHL SGDSSPSSPT SSGSSSPSSS GAAELAATNL EQVVSTSAAE DEADVAPTSP 60 RVGMGSSRNT RSPRMRPPTP RCPDSRTGCL ASLTIKLIPS ANAFRVTDFT TEHNHPLASA 120 APAVSLALLL WCYQAHHTTA LVPLRACQTL RMAHTPTCTL GPRRMHMSFT TGTQSTLDSV 180 FAAPTRSASV E |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015647573.1 | 6e-24 | protein FAR1-RELATED SEQUENCE 5 | ||||
| TrEMBL | C7J599 | 1e-22 | C7J599_ORYSJ; Os07g0496300 protein | ||||
| TrEMBL | I1QAU3 | 1e-22 | I1QAU3_ORYGL; Uncharacterized protein | ||||
| STRING | OS07T0496300-01 | 2e-23 | (Oryza sativa) | ||||
| STRING | ORGLA07G0123500.1 | 2e-23 | (Oryza glaberrima) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP35145 | 2 | 2 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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