PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00061.1.g00610.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 125aa MW: 14534.8 Da PI: 8.6631

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00061.1.g00610.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41.2	2.7e-13	35	59	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G++CkF+H++ Zjn_sc00061.1.g00610.1.am.mkhc 35 QPECQYYLKTGICKFGATCKFHHPR 59 799********************96 PP
2	zf-CCCH	17.9	5.7e-06	81	99	3	21
S---SGGGGTS--TTTTT- CS zf-CCCH 3 telCrffartGtCkyGdrC 21 +++C ++ rtG+Ck+G +C Zjn_sc00061.1.g00610.1.am.mkhc 81 EKECAYYIRTGHCKFGMTC 99 679*************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.943	32	60	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.8E-6	32	59	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.49E-7	35	61	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-10	35	59	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.8E-5	38	60	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.258	78	99	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	27	78	102	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MWQMDLGEAS ESVLYPERAV AVARMKGEYP QRVGQPECQY YLKTGICKFG ATCKFHHPRE 60 KAAMANRVQW NSLGYPLRPN EKECAYYIRT GHCKFGMTCS DWFVILRRPT ADVWRCPILY 120 SLTTE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006662931.1	2e-50	PREDICTED: zinc finger CCCH domain-containing protein 63
Swissprot	Q2R4J4	1e-50	C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBL	A0A0E0F5M4	8e-50	A0A0E0F5M4_9ORYZ; Uncharacterized protein
STRING	ORGLA11G0112800.1	1e-49	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP34972	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	9e-43	zinc finger protein 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]