PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00063.1.g01550.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 396aa MW: 41572.7 Da PI: 8.1997

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00063.1.g01550.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	38.5	2.5e-12	244	272	27	55
G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 A ++lelm+vk+Ltl+hvkSHLQ+YR+ Zjn_sc00063.1.g01550.1.am.mk 244 AATTSVLELMDVKDLTLAHVKSHLQMYRT 272 55578***********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-12	243	273	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-7	245	272	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MSIDQLVPGW QQGWHPELGT VREQSGAKAF FGLKKILRSK AGSPDAVMPL DARVKSCACL 60 APPTNVRVQT AVQSGRKEKG KAAYPSVYQS AEASQLARRK QGEGQATLSA TASVRVTGSV 120 EIDRSSMEFL PASQPDLSLQ IGLPTGATPP HDQLHHHHHH AAPNATFFAP GAGGVVGSAG 180 TMSPSPHLPS MPMPLPLPLP VPMHPGAAGH PGGGGGGLAP LGRRACGGRP RSTRASCTPS 240 RSSAATTSVL ELMDVKDLTL AHVKSHLQMY RTVKNTERPA TSSDQADGFE NGSAGEICDD 300 NSVDLHGYGG GGRPETAPRH GRLAASATCN DHGSGTDAHA CCPMELLLKV DHQMQQSKSL 360 EILSDMNSCV SETTTSITSD LNLEFTLGRP HQNRRN

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MSIDQLVPGW QQGWHPELGT VREQSGAKAF FGLKKILRSK AGSPDAVMPL DARVKSCACL  60
APPTNVRVQT AVQSGRKEKG KAAYPSVYQS AEASQLARRK QGEGQATLSA TASVRVTGSV  120
EIDRSSMEFL PASQPDLSLQ IGLPTGATPP HDQLHHHHHH AAPNATFFAP GAGGVVGSAG  180
TMSPSPHLPS MPMPLPLPLP VPMHPGAAGH PGGGGGGLAP LGRRACGGRP RSTRASCTPS  240
RSSAATTSVL ELMDVKDLTL AHVKSHLQMY RTVKNTERPA TSSDQADGFE NGSAGEICDD  300
NSVDLHGYGG GGRPETAPRH GRLAASATCN DHGSGTDAHA CCPMELLLKV DHQMQQSKSL  360
EILSDMNSCV SETTTSITSD LNLEFTLGRP HQNRRN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU957008	2e-75	EU957008.1 Zea mays clone 1580405 KANADI-like transcription factor FEATHERED mRNA, complete cds.
GenBank	KJ726819	2e-75	KJ726819.1 Zea mays clone pUT3358 G2-like transcription factor (GLK55) mRNA, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4721	36	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	7e-19	G2-like family protein