PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00063.1.g02270.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 271aa    MW: 29827.1 Da    PI: 10.6747
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00063.1.g02270.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.7e-15101145347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     +WT+eE+  ++ + ++lG+g+W+ Ia+++ +++t+ q+ s+ qky
  Zjn_sc00063.1.g02270.1.sm.mkhc 101 PWTEEEHRTFLAGLEKLGKGDWRGIAKHFVTTKTPTQVASHAQKY 145
                                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.50294150IPR017930Myb domain
SuperFamilySSF466891.08E-1795150IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-1897148IPR006447Myb domain, plants
SMARTSM007173.2E-1198148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-11100143IPR009057Homeodomain-like
CDDcd001671.28E-10101146No hitNo description
PfamPF002499.2E-13101145IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSRAPPTRMP RDLRPSVMRL FGVTITPALE VDPSDRDPSP KPPLAAREDV MRKCKSMGNL  60
AAAAAPVDGS STGDGYHSDD DGLMQSSNKR RMAQGRKKSV PWTEEEHRTF LAGLEKLGKG  120
DWRGIAKHFV TTKTPTQVAS HAQKYFLCQT NPNKKKRRSS FFDMMTGDAL PVPNCHILPS  180
SELHDVVAMT KQLQNSKLEG VSSSNSTTNV GSRIGRDLPP IPPFKPTSKD SSFSKLNLME  240
RWRIPFPFRP IPRGLEGTSS IPATANITTM A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131609.11e-117uncharacterized protein LOC100192961
TrEMBLA0A1E5VMR71e-117A0A1E5VMR7_9POAL; Transcription factor DIVARICATA
STRINGGRMZM2G157306_P021e-116(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.18e-37MYB_related family protein