PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00064.1.g01020.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 295aa    MW: 33505.2 Da    PI: 10.5775
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00064.1.g01020.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-18151205256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ ++tkeq   Le+ F+++++++ +++  LA++l+L  rqV vWFqNrRa++k
  Zjn_sc00064.1.g01020.1.am.mk 151 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALANQLNLRPRQVEVWFQNRRARRK 205
                                   78889************************************************98 PP
2HD-ZIP_I/II116.71.3e-37151239190
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRAR k+kq E+d+e Lkr y++l+een+rL+
  Zjn_sc00064.1.g01020.1.am.mk 151 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALANQLNLRPRQVEVWFQNRRARRKLKQAEVDCELLKRFYETLTEENRRLH 231
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLree 90 
                                    e ++Lr +
  Zjn_sc00064.1.g01020.1.am.mk 232 CELQRLR-A 239
                                   ******9.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-18137208IPR009057Homeodomain-like
PROSITE profilePS5007116.957147207IPR001356Homeobox domain
SMARTSM003892.0E-15149211IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-17149210IPR009057Homeodomain-like
PfamPF000461.8E-15151205IPR001356Homeobox domain
CDDcd000861.84E-14151208No hitNo description
PROSITE patternPS000270182205IPR017970Homeobox, conserved site
SMARTSM003401.1E-15207250IPR003106Leucine zipper, homeobox-associated
PfamPF021832.2E-7207240IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MVDGTRKRKV RRRSWIRWLD ERKRLIRAAR RPSRMAMGKR GRGGSERHRT RQREEYMEHE  60
EVGLALGLSL GSGHHWFKEQ PPPPPSQLCA LEPSMSISIR ADDGSLPTQA RPLNGAVKRE  120
FPVEDDDGPM DRGLYSVVSS AADDDEGCNS RKKLRLTKEQ SALLEDRFKE HSTLNPKQKV  180
ALANQLNLRP RQVEVWFQNR RARRKLKQAE VDCELLKRFY ETLTEENRRL HCELQRLRAL  240
DHPHPAAFFM PGAALSICPS CERLASTPGA ATATDRPKAT GPAPLLSNFT KSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1623KRKVRRRSWIRWLDERKR
2149155SRKKLRL
3199207RRARRKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983488.11e-108homeobox-leucine zipper protein HOX15
SwissprotQ7G7376e-71HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLK4AE821e-107K4AE82_SETIT; Uncharacterized protein
STRINGSi037189m1e-108(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-61HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]