PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00065.1.g00510.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 444aa MW: 46499.7 Da PI: 5.9175

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00065.1.g00510.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.5	8.2e-32	83	185	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklk 67 fYn YA++vGFs+r+s +++s+r+g++++r+fvC keg+r+ + k+ + + rrtra+tr+gCka+++ Zjn_sc00065.1.g00510.1.sm.mkhc 83 FYNVYAHRVGFSTRISVMHRSRRDGSVMSRQFVCAKEGFRTYRGKNevaradagtgdedSGRGRRTRAVTRVGCKAMIR 161 *******************************************************999999************ PP FAR1 68 vkkekdgkwevtkleleHnHelap 91 vkk+++g+w vtkle+ HnH+l p Zjn_sc00065.1.g00510.1.sm.mkhc 162 VKKQDNGRWSVTKLETAHNHPLIP 185 *******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.5E-30	83	185	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MERGAGSEQG SPESEMGDGD NDSVGYGAEM EVDAGSGSAG AAPASSASAS VSASAYAART 60 GAYEGVDPFE GMEFADEEDA WTFYNVYAHR VGFSTRISVM HRSRRDGSVM SRQFVCAKEG 120 FRTYRGKNEV ARADAGTGDE DSGRGRRTRA VTRVGCKAMI RVKKQDNGRW SVTKLETAHN 180 HPLIPADQSH CLRPHKPLSE CGKQKPFGGH RNEFRSPRRS KVIVLKMALQ EAANRSHELS 240 QANGNSGSSV NALNSNAAQQ LVTVPIGFCP SMDGSNISAA GMNSSHPGDA SSNGKVSSAQ 300 QAATHSQAKA PDSIGSRGNP EGSSIRAAAI AAGARIASPS DAASIIKAAQ SKGAIRIKPG 360 ENLPNCLKPL APKPLTSLPP VNTPNSEHPS PGHAQPGQLR FGDSAATKDA IFGSSDGSDD 420 EYDDDTTDDD DEDEALTGDD AEHE

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MERGAGSEQG SPESEMGDGD NDSVGYGAEM EVDAGSGSAG AAPASSASAS VSASAYAART  60
GAYEGVDPFE GMEFADEEDA WTFYNVYAHR VGFSTRISVM HRSRRDGSVM SRQFVCAKEG  120
FRTYRGKNEV ARADAGTGDE DSGRGRRTRA VTRVGCKAMI RVKKQDNGRW SVTKLETAHN  180
HPLIPADQSH CLRPHKPLSE CGKQKPFGGH RNEFRSPRRS KVIVLKMALQ EAANRSHELS  240
QANGNSGSSV NALNSNAAQQ LVTVPIGFCP SMDGSNISAA GMNSSHPGDA SSNGKVSSAQ  300
QAATHSQAKA PDSIGSRGNP EGSSIRAAAI AAGARIASPS DAASIIKAAQ SKGAIRIKPG  360
ENLPNCLKPL APKPLTSLPP VNTPNSEHPS PGHAQPGQLR FGDSAATKDA IFGSSDGSDD  420
EYDDDTTDDD DEDEALTGDD AEHE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF466201	0.0	AF466201.1 Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003559622.3	1e-108	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A3L6TN54	1e-108	A0A3L6TN54_PANMI; Protein FAR1-RELATED SEQUENCE 5-like
STRING	BRADI1G13310.1	1e-107	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-25	FAR1-related sequence 5