PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00065.1.g00770.1.cf.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

YABBY

Protein Properties

Length: 170aa MW: 19335.1 Da PI: 9.3482

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00065.1.g00770.1.cf.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	226.9	5.2e-70	4	162	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveee 80 +++ ++e+vCyv+CnfCntilavsvPs++++++vtvrCGhCts+lsvnl+ q l++++h l+++ kv++ Zjn_sc00065.1.g00770.1.cf.mkhc 4 QITPAPEHVCYVHCNFCNTILAVSVPSNTMLNIVTVRCGHCTSMLSVNLRGLIQSLPVQNH--------LQDNFKVHNI 74 56789*****************************************************9........7889999999 PP YABBY 81 nlksnvekeesastsvssekl.se.nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaa 157 ++++n +++ + ++ ++ ++ s+ ++++++ + +r Pekr rvPsayn+fikeei+rikas Pdishreafs+aa Zjn_sc00065.1.g00770.1.cf.mkhc 75 SFTENCSQYAPSPSKYRTPSMfSTmHDQDHMLH----VRAPEKRHRVPSAYNKFIKEEIRRIKASKPDISHREAFSTAA 149 999999998877766666655455044555555....89************************************ PP YABBY 158 knWahfPkihfgl 170 knWahfP+ihfgl Zjn_sc00065.1.g00770.1.cf.mkhc 150 KNWAHFPNIHFGL 162 *********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.2E-69	9	162	IPR006780	YABBY protein
SuperFamily	SSF47095	1.3E-6	104	156	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.8E-4	108	156	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MSSQITPAPE HVCYVHCNFC NTILAVSVPS NTMLNIVTVR CGHCTSMLSV NLRGLIQSLP 60 VQNHLQDNFK VHNISFTENC SQYAPSPSKY RTPSMFSTMH DQDHMLHVRA PEKRHRVPSA 120 YNKFIKEEIR RIKASKPDIS HREAFSTAAK NWAHFPNIHF GLGPHESNKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795820.1	1e-105	protein YABBY 2-like isoform X4
Swissprot	Q10FZ7	1e-97	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A2T7C330	1e-105	A0A2T7C330_9POAL; Uncharacterized protein
STRING	Pavir.Ia01130.1.p	1e-99	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-57	YABBY family protein