PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00065.1.g02330.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 239aa MW: 25414.7 Da PI: 9.3363

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00065.1.g02330.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113	1.3e-35	73	126	5	58
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 +cprC s++tkfCyynny++sqPr+fC++CrryWt GG+lrnvP+Gg++rk+ Zjn_sc00065.1.g02330.1.am.mk 73 GEQCPRCASHDTKFCYYNNYNTSQPRHFCRSCRRYWTLGGSLRNVPIGGSTRKR 126 579*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	27.4	74	128	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.6E-31	74	126	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-23	75	121	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	76	112	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MMEAPLHQQA SSLSLGPQLQ ANYKSDHHLA IATSVAAKMA VSGCGSTAET AYLQQLHQTT 60 AVTEANGNNG ARGEQCPRCA SHDTKFCYYN NYNTSQPRHF CRSCRRYWTL GGSLRNVPIG 120 GSTRKRPPLA HPTSAPPASR RHVVFGGGGA AAPPTGLLGS LFALRAWPRA SNAEWRGRCL 180 RWGGLGGASE LLWPAGLLDN GIADEWKVPS VSEATWPEFF AAVAPPQAGG LLHGGAQLM

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC107206	2e-74	AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence.
GenBank	AK119803	2e-74	AK119803.1 Oryza sativa Japonica Group cDNA clone:002-176-F03, full insert sequence.
GenBank	AP014959	2e-74	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	2e-74	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698063.1	1e-46	dof zinc finger protein DOF1.6
TrEMBL	A0A1E5UZ74	2e-50	A0A1E5UZ74_9POAL; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-28	DOF zinc finger protein 1