PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00066.1.g01470.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 110aa MW: 12302.5 Da PI: 4.313

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00066.1.g01470.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	87	103	39	55
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 +Ka++Le A+eY+k+Lq Zjn_sc00066.1.g01470.1.sm.mk 87 DKASMLEDAIEYLKQLQ 103 8***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.9E-4	86	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MDGQQLDLIM RHKSMANICE SEDALGSSES EHARPARPRG KRSRAAEVHN LSEKEMLIDP 60 DAHEIGAEEE EQDKREDEGA ADAFLTDKAS MLEDAIEYLK QLQLQVQGPN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT037069	2e-54	BT037069.1 Zea mays full-length cDNA clone ZM_BFb0153L05 mRNA, complete cds.
GenBank	EU957773	2e-54	EU957773.1 Zea mays clone 1615677 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804956.1	1e-36	transcription factor EC-like isoform X1
Refseq	XP_025804964.1	1e-36	uncharacterized protein LOC112883903 isoform X2
TrEMBL	A0A2T8KY92	2e-35	A0A2T8KY92_9POAL; Uncharacterized protein
TrEMBL	A0A368PTP7	2e-35	A0A368PTP7_SETIT; Uncharacterized protein
STRING	Pavir.J11618.1.p	4e-36	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3336	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	6e-09	bHLH family protein