PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00066.1.g03280.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 138aa    MW: 16571.8 Da    PI: 7.9005
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00066.1.g03280.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.25.1e-221772156
                                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                  +++ +++t+ q++ Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k
  Zjn_sc00066.1.g03280.1.sm.mk 17 KKRYHRHTPRQIQMLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMK 72
                                  678899***********************************************998 PP
2HD-ZIP_I/II64.23.1e-2120101384
                   HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                    +r +  q+++LE +F+e  + + +++++l+reLgl+prq++ WFqnrR  +k+++   d  +L+++ d+++ en ++++ 
  Zjn_sc00066.1.g03280.1.sm.mk  20 YHRHTPRQIQMLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMKAQHERADNCFLRAENDKIRCENIAMREA 100
                                   3477889********************************************************************999876 PP

                   HD-ZIP_I/II  84 v 84 
                                    
  Zjn_sc00066.1.g03280.1.sm.mk 101 L 101
                                   5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.85E-22674IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-231179IPR009057Homeodomain-like
PROSITE profilePS5007118.0421474IPR001356Homeobox domain
SMARTSM003896.9E-201578IPR001356Homeobox domain
PfamPF000461.4E-191772IPR001356Homeobox domain
CDDcd000869.22E-171775No hitNo description
PRINTSPR000313.1E-54554IPR000047Helix-turn-helix motif
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
PRINTSPR000313.1E-55470IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MDFGDDVMEG SDSQRRKKRY HRHTPRQIQM LEAMFKECPH PDENQRMQLS RELGLEPRQI  60
KFWFQNRRTQ MKAQHERADN CFLRAENDKI RCENIAMREA LRNVICPTCG GPHVADDYFD  120
EQKLRMENAR LKEEASLF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7285231e-171KJ728523.1 Zea mays clone pUT6828 HB transcription factor (HB83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954072.16e-90homeobox-leucine zipper protein ROC8
SwissprotQ69T588e-87ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A3L6F4D22e-91A0A3L6F4D2_MAIZE; Homeobox-leucine zipper protein ROC8
STRINGSi016483m2e-89(Setaria italica)
STRINGGRMZM2G145690_P013e-89(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15929915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.13e-67homeodomain GLABROUS 11