PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00067.1.g00110.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 226aa    MW: 25187.8 Da    PI: 9.0972
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00067.1.g00110.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.45.3e-2244105259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                                     dDg++WrKYG K+  +s fpr YYrCt++   +C ++k+v+++ ++dp ++ +tY ++H+++
  Zjn_sc00067.1.g00110.1.sm.mkhc  44 DDGHQWRKYGEKKLSNSSFPRFYYRCTYKnemKCAATKQVQQKdTSDPPLFSVTYFNHHTCS 105
                                     8***************************99999*******876157**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-2233105IPR003657WRKY domain
SuperFamilySSF1182903.66E-2236106IPR003657WRKY domain
PROSITE profilePS5081115.9538107IPR003657WRKY domain
SMARTSM007742.9E-3243106IPR003657WRKY domain
PfamPF031062.3E-2444104IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MALESVPLYP GGDLASSRAT SRAHQQRIRK DERSWTTDTY APYDDGHQWR KYGEKKLSNS  60
SFPRFYYRCT YKNEMKCAAT KQVQQKDTSD PPLFSVTYFN HHTCSTSSGP MGRGSYTRDA  120
TVQSSSLSIC FSSHSSSEQP TFLTSAITPA SPNTQSYRAN QQLDRSAYAG RQFQWPGTSS  180
PGSNGLLKME IDNFSEASAS SSSSGVLSRT LLPIGQSRCI EYFHFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-1544104968OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586295e-81KU058629.1 UNVERIFIED: Panicum miliaceum WRKY20-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827915.11e-107probable WRKY transcription factor 46 isoform X1
TrEMBLA0A3L6R8801e-109A0A3L6R880_PANMI; Putative WRKY transcription factor 48
STRINGPavir.J31578.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.16e-20WRKY DNA-binding protein 46