PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00067.1.g00250.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 274aa    MW: 29907.6 Da    PI: 6.9337
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00067.1.g00250.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-0949742248
                                  T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48
                                  +tW++Ia++++  Rt++++k++w+++l
  Zjn_sc00067.1.g00250.1.am.mk 49 RTWSAIASYLP-QRTDNDIKNYWNTHL 74
                                  49*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-134781IPR009057Homeodomain-like
PfamPF002494.0E-74974IPR001005SANT/Myb domain
SuperFamilySSF466897.5E-84981IPR009057Homeodomain-like
PROSITE profilePS500906.3655174IPR017877Myb-like domain
CDDcd001674.62E-55172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MQPAGLTTGP HATPHTMRDV PSFSACPRRA NRMRCGALPC KTQTTTRART WSAIASYLPQ  60
RTDNDIKNYW NTHLKKKLKK HQAISAIFAP PPSDLLSSSS APALTGTSHT DHPMMTSPLS  120
KDNYEPRTEC RNPGDDVTQL IARRSPFAAP AGSLDAESSS YSSYASSMDN ISKLLDSFMK  180
SITPQNDAAD IKPSSNPFLS FEQVSGGGAL SNFADVLPPQ PVLMDERSHH EQPKQQQAQA  240
PLSSIEKWLL DEAAEQVGDL MDQFDGCCSV PMLF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283086e-41KJ728308.1 Zea mays clone pUT6588 MYB transcription factor (MYB69) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827828.12e-61transcription factor MYB30-like
TrEMBLA0A3L6P9F72e-68A0A3L6P9F7_PANMI; Transcription factor MYB30-like
STRINGPavir.J19088.1.p1e-55(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.24e-14myb domain protein 60