PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00067.1.g00260.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 252aa    MW: 28437.7 Da    PI: 10.0968
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00067.1.g00260.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.6e-17153200148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT eEd +lv +v+++G+g+W++++   g+ R+ k+c++rw +yl
  Zjn_sc00067.1.g00260.1.am.mk 153 KGPWTSEEDIILVSYVQEHGPGNWRSVPISTGLMRCSKSCRLRWTNYL 200
                                   79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.385148204IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.8E-20151199IPR009057Homeodomain-like
SMARTSM007174.2E-12152202IPR001005SANT/Myb domain
PfamPF002491.8E-15153200IPR001005SANT/Myb domain
SuperFamilySSF466897.98E-20154224IPR009057Homeodomain-like
CDDcd001677.93E-11155200No hitNo description
Gene3DG3DSA:1.10.10.604.9E-5200223IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MPSPPERYIW WHLYSPTEAR GHYRPITLHQ LAGRVTGVAN SPIEGNNMTV PAAVADATDN  60
KQPPSIIVIQ SAAAEKSMIG WLLSSSWQMR FLPDGGGLSC TLHCRRQQGP EISSILTTID  120
VDNRQQLAQP SCGRPSPEKM GRPPCCDMVG IKKGPWTSEE DIILVSYVQE HGPGNWRSVP  180
ISTGLMRCSK SCRLRWTNYL RPGIRRGNFT PHEEGIIVHL HVRARPVNQH KTHAKMVKNT  240
EMFWCRKTLR RF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283089e-77KJ728308.1 Zea mays clone pUT6588 MYB transcription factor (MYB69) mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6612022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.12e-52myb domain protein 60