PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00067.1.g01840.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 245aa MW: 26848.6 Da PI: 7.5309

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00067.1.g01840.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.8	4.2e-16	41	89	1	52
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 + y+GVr++ grWv+e+r+p +k+ r++lg+f tae Aa+a++ r++ Zjn_sc00067.1.g01840.1.am.mk 41 PVYRGVRRRGPAGRWVCEVREP---NKKSRIWLGTFATAEAAARAHDDIRRA 89 68**************9998...347*****************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.1E-12	41	89	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-21	42	88	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.45E-14	42	88	IPR016177	DNA-binding domain
PROSITE profile	PS51032	16.937	42	84	IPR001471	AP2/ERF domain
SMART	SM00380	9.2E-13	42	109	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-5	43	54	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-5	66	82	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MEYVDVMGYD EQVAEGEYAT VMSAPPKRPA GRTKFRETRH PVYRGVRRRG PAGRWVCEVR 60 EPNKKSRIWL GTFATAEAAA RAHDDIRRAA IELAEASSQQ DAAAAAASSS GAVVDTAATL 120 PTMTHHQAEA APYDYDMYRN MDFDQSYYYD PMGGAGGSCD WQTTNWHMDG DDDGSGAAGC 180 GGSDGTSTHR QHKFQDRAHG GTDALFARAA RLLTNRPSCT PACFFERSCS RAAAWSRSRP 240 RRLVP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB627353	9e-86	AB627353.1 Zoysia japonica gene for CBF, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964394.1	5e-49	dehydration-responsive element-binding protein 1C
Swissprot	A2Y8S6	9e-39	DRE1C_ORYSI; Dehydration-responsive element-binding protein 1C
Swissprot	Q9LWV3	9e-39	DRE1C_ORYSJ; Dehydration-responsive element-binding protein 1C
TrEMBL	A0A1E5W5R3	5e-62	A0A1E5W5R3_9POAL; Peroxisomal membrane protein 11-5
STRING	Si007199m	1e-48	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25480.1	2e-25	dehydration response element B1A

Publications ? help Back to Top
Kim SJ, et al. Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants. Mol. Cells, 2009. 27(4): p. 449-58 [PMID:19390826] Kim MJ, et al. Quadruple 9-mer-based protein binding microarray with DsRed fusion protein. BMC Mol. Biol., 2009. 10: p. 91 [PMID:19761621] Kim MJ, et al. Convenient determination of protein-binding DNA sequences using quadruple 9-mer-based microarray and DsRed-monomer fusion protein. Methods Mol. Biol., 2012. 786: p. 65-77 [PMID:21938620] Min HJ,Jung YJ,Kang BG,Kim WT CaPUB1, a Hot Pepper U-box E3 Ubiquitin Ligase, Confers Enhanced Cold Stress Tolerance and Decreased Drought Stress Tolerance in Transgenic Rice (Oryza sativa L.). Mol. Cells, 2016. 39(3): p. 250-7 [PMID:26674966] Dou M,Cheng S,Zhao B,Xuan Y,Shao M The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice. Int J Mol Sci, 2016. 17(3): p. 233 [PMID:26927068]