PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00067.1.g02730.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 266aa    MW: 28108.6 Da    PI: 9.6841
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00067.1.g02730.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.8e-2080134256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ +++k+q  +Lee+F+ +++++ ++++ LA++lgL  rqV vWFqNrRa+ k
  Zjn_sc00067.1.g02730.1.am.mk  80 RKKLRLSKDQAAVLEECFKTHHTLTPKQKAALANSLGLRPRQVEVWFQNRRARTK 134
                                   788899***********************************************98 PP
2HD-ZIP_I/II1246.9e-4080169191
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rlsk+q+++LEe+F+++++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL 
  Zjn_sc00067.1.g02730.1.am.mk  80 RKKLRLSKDQAAVLEECFKTHHTLTPKQKAALANSLGLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCERLAEENRRLG 160
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreel 91 
                                   ke +eLr +l
  Zjn_sc00067.1.g02730.1.am.mk 161 KELAELR-AL 169
                                   ******9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.71476136IPR001356Homeobox domain
SuperFamilySSF466892.3E-1878144IPR009057Homeodomain-like
SMARTSM003892.6E-1778140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-1980134IPR009057Homeodomain-like
CDDcd000869.96E-1780137No hitNo description
PfamPF000462.4E-1780134IPR001356Homeobox domain
PRINTSPR000311.0E-5107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000311.0E-5116132IPR000047Helix-turn-helix motif
SMARTSM003405.7E-19136179IPR003106Leucine zipper, homeobox-associated
PfamPF021837.2E-10136169IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVPQSLDLGL SLGLGLAASQ PASFHNYSGN NAVAMPDHQE ERTRCSPAGS PVSSGSGKRA  60
AEIRSTGSSG DEDDVDGAAR KKLRLSKDQA AVLEECFKTH HTLTPKQKAA LANSLGLRPR  120
QVEVWFQNRR ARTKLKQTEV DCEHLKRWCE RLAEENRRLG KELAELRALN AASPPAPPLT  180
TLSMCLSCRR VSSSSSTSSP SNATTDVLAA PPHGHAAANT AGNGITSPAA AAMPGHRQFF  240
CGFREAGPSA AYAASSGLAK AVKEAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128136RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9681201e-112EU968120.1 Zea mays clone 314746 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812705.15e-96homeobox-leucine zipper protein HOX28-like
SwissprotA2Y9313e-65HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE53e-65HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLA0A2S3HLY51e-94A0A2S3HLY5_9POAL; Uncharacterized protein
STRINGPavir.Da02255.1.p6e-92(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-44homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]