PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00067.1.g02990.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 499aa    MW: 52962.2 Da    PI: 9.0469
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00067.1.g02990.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.71.6e-09821281455
                           AP2  14 rWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   r++A+++d  ++n    k+ k+++lg +  +e Aa+a++ a++k++g
  Zjn_sc00067.1.g02990.1.am.mk  82 RFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEEAAARAYDLAALKYWG 128
                                   78999999877744555447*************************98 PP
2AP224.19.1e-08171214155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV +++ +grW+A+I   +               t eeAa+a++ a+ +++g
  Zjn_sc00067.1.g02990.1.am.mk 171 SKYRGVARHHHNGRWEARIGRvF-G-----------NNTQEEAARAYDIAAIEYRG 214
                                   89****99**********77733.2...........2356**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.0E-1776142IPR001471AP2/ERF domain
PROSITE profilePS5103217.63576136IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1376137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-1276136IPR001471AP2/ERF domain
PfamPF008473.7E-681128IPR001471AP2/ERF domain
CDDcd000187.85E-16171224No hitNo description
SuperFamilySSF541713.47E-11171224IPR016177DNA-binding domain
SMARTSM003802.9E-14172228IPR001471AP2/ERF domain
PROSITE profilePS5103212.958172222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-8172223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
METYSLLVKD ELNGIGGGGG RGALYCTAAP RGGGGDGPMK SVKRRKREPS TAAVGKELAG  60
GDKSGSGGNA AKRSSRFRGV SRFEAHLWDK GTWNPTQKKK GKQVYLGAYN EEEAAARAYD  120
LAALKYWGPS TYTNFPVVDY EKELNVMQNV SKEEYLASIR RKSNGFSRGV SKYRGVARHH  180
HNGRWEARIG RVFGNNTQEE AARAYDIAAI EYRGINAVTN FDLSSYIRWL KPAGAGAVED  240
GNSGGTPTSG VKPAILPSLC LQGVHQAAGS LLQHTHGAAA MLQGGSLAGL DDVGSAYASG  300
PRLTAVCGRP TGALAGLDDV SSVYTGGPSP TAVCGRPSPS SSATALSLLL RSSMFQELVA  360
RNADAAAQAE QLPAAAEVDH VTASDVEADT KPALEEPPTG ETGDALYDAG ADDAFACSMY  420
ELDDSFACMQ QSFWNYCLYV PNGPFLRSDK VDGPSVSRVP RAAQSMAWKS RAGRNCFGPV  480
NRPGQLFKAK PRIYATRLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945KSVKRRK
294102PTQKKKGKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9486481e-43EU948648.1 Zea mays clone 381378 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681620.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLK3Y0Z50.0K3Y0Z5_SETIT; Uncharacterized protein
STRINGSi007857m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.39e-67AP2 family protein