PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00068.1.g02030.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 235aa    MW: 26251.2 Da    PI: 9.7869
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00068.1.g02030.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.1e-1899153256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ ++tkeq + Le  F++++ +s++++ eLA++++Lt rqV vWFqNrRa+ k
  Zjn_sc00068.1.g02030.1.sm.mk  99 RKKLRLTKEQSTLLEGTFRSHNILSHAQKHELARRVNLTPRQVEVWFQNRRARTK 153
                                   788899***********************************************98 PP
2HD-ZIP_I/II1124e-3699186188
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rl+keq++lLE +F++++ L++ +K+elar+++l+prqv+vWFqnrRARtk+kq+E+dye Lkr+y++l++en+rL+
  Zjn_sc00068.1.g02030.1.sm.mk  99 RKKLRLTKEQSTLLEGTFRSHNILSHAQKHELARRVNLTPRQVEVWFQNRRARTKLKQTEVDYELLKRCYESLTDENQRLK 179
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLr 88 
                                    e  +++
  Zjn_sc00068.1.g02030.1.sm.mk 180 LELVAMQ 186
                                   9987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-1983156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-1885154IPR009057Homeodomain-like
PROSITE profilePS5007117.05495155IPR001356Homeobox domain
SMARTSM003898.6E-1497159IPR001356Homeobox domain
CDDcd000862.20E-1499156No hitNo description
PfamPF000462.1E-1599153IPR001356Homeobox domain
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
SMARTSM003402.9E-12155198IPR003106Leucine zipper, homeobox-associated
PfamPF021836.8E-9155184IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MLYKPNCTEK DGLGSWLRLG IGGGCSPRRS HGERWSSVQF DKQEEIGGRD HKQAENKKSD  60
NKSSTRKRSA KAIDDDARSP SRGPSPSEDA HDGGDVGTRK KLRLTKEQST LLEGTFRSHN  120
ILSHAQKHEL ARRVNLTPRQ VEVWFQNRRA RTKLKQTEVD YELLKRCYES LTDENQRLKL  180
ELVAMQRSAA AAGLYVHQFP RAAAADTVSI CPSCDKDTVT SGGETSNKSS TSYCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197103TRKKLRL
2147155RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966133.17e-74homeobox-leucine zipper protein HOX18
SwissprotQ5Z6F62e-54HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A368QXX72e-72A0A368QXX7_SETIT; Uncharacterized protein
TrEMBLK3XZ801e-72K3XZ80_SETIT; Uncharacterized protein
STRINGSi007238m2e-73(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-42homeobox from Arabidopsis thaliana