PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00068.1.g02900.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SRS
Protein Properties Length: 350aa    MW: 34852.6 Da    PI: 8.0396
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00068.1.g02900.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702214.82e-661122714154
                        DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkre 77 
                                    ++sCqdCGn+akkdCah+RCRtCC+srgf+C thvkstWvpaakrrerqqqlaa+ + aa+++       a+aaskr+re
  Zjn_sc00068.1.g02900.1.sm.mk 112 AGTSCQDCGNNAKKDCAHMRCRTCCRSRGFSCPTHVKSTWVPAAKRRERQQQLAALFRGAANNSasasaaaAAAASKRPRE 192
                                   4579****************************************************9998888778888877888899999 PP

                        DUF702  78 l..kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                   l  +  +  ++ss+ +++++s+   +  ++P+e+s+eavfrcvr++ vd+ ++elaYqtavsigGh+fkGiL+d+G+++
  Zjn_sc00068.1.g02900.1.sm.mk 193 LvrSLGRLPSASSAMVATTTSSGDGSGGRFPPELSVEAVFRCVRIGPVDEPDAELAYQTAVSIGGHTFKGILRDHGPAD 271
                                   85533334444444555555555566777***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.6E-63113270IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-25115157IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.7E-18221269IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAGFSLRGGG GGGGGRAGDR SGDHSIGADS LFLYARGAAA AAADTAGSGG GGGGIGFQLW  60
HPHQQSAAAA APHTSQFFSS GVATGVVLGF SSHDGGGGIG GAGGGGTGGG RAGTSCQDCG  120
NNAKKDCAHM RCRTCCRSRG FSCPTHVKST WVPAAKRRER QQQLAALFRG AANNSASASA  180
AAAAAASKRP RELVRSLGRL PSASSAMVAT TTSSGDGSGG RFPPELSVEA VFRCVRIGPV  240
DEPDAELAYQ TAVSIGGHTF KGILRDHGPA DDAAVGQLPP YSAEYHQLTG AGRHESSPAG  300
GSEAAATAVT SAAVLMDPYP TPIGAFAAGT HTDALVLMSL IYEVEILLEK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1615RGGGGGGGGR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813341.11e-148protein SHI RELATED SEQUENCE 1
TrEMBLA0A2T7DU751e-153A0A2T7DU75_9POAL; Uncharacterized protein
STRINGPavir.J38504.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-50Lateral root primordium (LRP) protein-related