PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00068.1.g03540.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 172aa MW: 19117 Da PI: 7.1412

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00068.1.g03540.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.4	2.8e-06	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C+++F++ + H+r+H Zjn_sc00068.1.g03540.1.sm.mk 64 YSCPVCDRHFKTEKAVHGHMRSH 86 99********************9 PP
2	zf-C2H2	12.7	0.00037	112	134	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg F ++ L H +H Zjn_sc00068.1.g03540.1.sm.mk 112 YSCEHCGSQFETRQALGGHRASH 134 99**************9999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.03E-7	53	86	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	56	86	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.806	64	86	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0018	64	86	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	1.6E-6	64	86	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	66	86	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.19E-5	109	139	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.3E-4	111	138	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.066	112	134	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.113	112	139	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.9E-6	112	135	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	114	134	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MDGSTQVFFV GVAYGRLLSS VAGGSGGDEP RQPWHPSSVH EADSAPAQRK QRSTSNTEEG 60 QGPYSCPVCD RHFKTEKAVH GHMRSHPDRA WRGMEEPHPT DPTAMDEKQY RYSCEHCGSQ 120 FETRQALGGH RASHNGKKGC FRLSRQPTAM AAQPRHVLPF DLNDPAPEHQ EE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002439063.2	6e-53	zinc finger protein ZAT3
TrEMBL	A0A3L6ERH0	1e-50	A0A3L6ERH0_MAIZE; Uncharacterized protein
STRING	Pavir.J33608.1.p	1e-51	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13010	27	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17180.1	5e-14	C2H2-like zinc finger protein