PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00069.1.g00460.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 191aa    MW: 21206.1 Da    PI: 9.7217
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00069.1.g00460.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.3e-081391722154
                                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     k +yp+ e++++L +++gL+ +q+ +WF N+R +
  Zjn_sc00069.1.g00460.1.sm.mkhc 139 KWPYPTDEDKTRLVQETGLQLKQINNWFINQRKR 172
                                     569*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-193175IPR005540KNOX1
PfamPF037907.0E-173471IPR005540KNOX1
PROSITE profilePS5007111.645113176IPR001356Homeobox domain
SuperFamilySSF466895.56E-16115181IPR009057Homeodomain-like
SMARTSM003894.8E-10115180IPR001356Homeobox domain
CDDcd000861.15E-11116177No hitNo description
Gene3DG3DSA:1.10.10.601.5E-24120179IPR009057Homeodomain-like
PfamPF059201.8E-18133172IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MMAFQYADHE LGMDAAANPG FGAGVVGSGW EREKAAIAAH PLYERLLEAH VACLRVATPV  60
DQLPRIDAQI AARPPPMAAA AAAAAVGGAQ SGDEELDLFM GYREKLVDIR EEIMRKRRAG  120
KLPGDTASTL KAWWQAHSKW PYPTDEDKTR LVQETGLQLK QINNWFINQR KRNWHNNLAS  180
SSSDKSKRKR S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169189RKRNWHNNLASSSSDKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1823864e-47AM182386.2 Zea mays partial mRNA for KNOX family class 2 homeodomain protein (knox7 gene), variant 2.
GenBankAP0040874e-47AP004087.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1297_C09.
GenBankAP0149584e-47AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCT8354394e-47CT835439.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA051K01, full insert sequence.
GenBankEU9685244e-47EU968524.1 Zea mays clone 321842 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ0J6N41e-50KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA3A3U62e-66A3A3U6_ORYSJ; Uncharacterized protein
STRINGOGLUM06G23980.14e-55(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4606933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.22e-47KNOTTED1-like homeobox gene 3