PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00071.1.g00350.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 317aa    MW: 34882.9 Da    PI: 7.0143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00071.1.g00350.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09181221954
                                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  Zjn_sc00071.1.g00350.1.am.mk 181 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 221
                                   699*****************87.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.555172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-15177232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-15178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13178231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-7182221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.44E-7195226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDNITRNSSS SSSWDLDMSL GSHHHPLLFD SQQVSAAPPP PPLPFHISSS HHHHPPLHPT  60
HHHLHHPSMD PSQSSSLFSP PHHRLHHLGL DVDLSSHHRH QHEYGDQQEH HHEQAEELRQ  120
QEPVGQQDER AAEDVEEELG AMKEMMYRIA AMQPVDIDPV TIKKPRRRNV RISEDPQSVA  180
ARHRRERISE RIRILQRLVP GGTKMDTASM LDEAIRYIKF LKRQVQDLQH QPPPQQYPAA  240
AGAPAAGPSA SFVGLPGRPS GPFLPLGPGP LIDCAGLVRP VDVHGPTSSS SSSSMGGAHA  300
ALGFGFSSAG QSSQGMH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2410051e-113AK241005.1 Oryza sativa Japonica Group cDNA, clone: J065053F23, full insert sequence.
GenBankAP0044621e-113AP004462.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0450B04.
GenBankAP0045841e-113AP004584.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0007D08.
GenBankAP0149641e-113AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-113CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822758.11e-110transcription factor HEC2-like
TrEMBLA0A2T7D2I01e-116A0A2T7D2I0_9POAL; Uncharacterized protein
STRINGSi015197m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.12e-36bHLH family protein