PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00071.1.g00600.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 293aa MW: 31967.2 Da PI: 10.2332

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00071.1.g00600.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92.6	6.5e-29	12	87	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v +++++ +glkktLvfy g+apkg +++W+m+eyrl Zjn_sc00071.1.g00600.1.sm.mkhc 12 IGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVRVEGNRSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 87 4789**********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.557	1	107	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-34	10	107	IPR003441	NAC domain
Pfam	PF02365	2.3E-12	15	87	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MLAYIVTSLA SIGDKEWFFY VPRDRKYRNG DRPNRVTPSG YWKATGADRM VRVEGNRSIG 60 LKKTLVFYVG KAPKGLRSSW IMNEYRLPHG EADRYQKEIS LCRVYKRPGI EDNFHLTGMT 120 ARSSGSKAAA TMDKKHRTSA SPRLAPMFDG GHSSGLMNKP YSGTNNGLTP SSAAAAAPAA 180 VLQTSMFRST AGSAASLSSA TSTEEDGTSL YHLKGANPML PSSTHALLNA NSTTMATIPI 240 DELSRAIGSY NNNGNPNQQP LPFQGPLLPF PSMEKIWDWN PLLESPKVCP SFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-33	4	107	60	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-33	4	107	60	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-33	4	107	60	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-33	4	107	60	165	NO APICAL MERISTEM PROTEIN
3swm_A	6e-33	4	107	63	168	NAC domain-containing protein 19
3swm_B	6e-33	4	107	63	168	NAC domain-containing protein 19
3swm_C	6e-33	4	107	63	168	NAC domain-containing protein 19
3swm_D	6e-33	4	107	63	168	NAC domain-containing protein 19
3swp_A	6e-33	4	107	63	168	NAC domain-containing protein 19
3swp_B	6e-33	4	107	63	168	NAC domain-containing protein 19
3swp_C	6e-33	4	107	63	168	NAC domain-containing protein 19
3swp_D	6e-33	4	107	63	168	NAC domain-containing protein 19
4dul_A	5e-33	4	107	60	165	NAC domain-containing protein 19
4dul_B	5e-33	4	107	60	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002443756.1	1e-157	NAC domain-containing protein 35
TrEMBL	A0A1E5V4Y2	1e-162	A0A1E5V4Y2_9POAL; NAC domain-containing protein 35
STRING	Pavir.J38855.1.p	1e-161	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7706	36	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	4e-61	NAC domain containing protein 35