PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00071.1.g02530.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 229aa    MW: 25644.3 Da    PI: 5.0217
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00071.1.g02530.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B384.69.1e-2743132192
                                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                   f+kvltpsdv+k++rlv+pk++ae++  +  ++++l +ed+ g  W+++++y+++s++yv+tkGW+ Fv+a  L +gD+v 
  Zjn_sc00071.1.g02530.1.am.mk  43 FDKVLTPSDVGKLNRLVVPKQHAERFFPEAGNGTQLCFEDRAGAPWRFRYSYWGSSQSYVMTKGWSLFVRAASLAAGDTVS 123
                                   89************************666678889********************************************** PP

                                   EEE-SSSEE.. CS
                            B3  82 Fkldgrsefel 92 
                                   F++    ++++
  Zjn_sc00071.1.g02530.1.am.mk 124 FSR--GAGGRY 132
                                   *93..345555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-3637140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-2740144IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-2441134No hitNo description
PfamPF023627.8E-2443130IPR003340B3 DNA binding domain
PROSITE profilePS5086313.40843140IPR003340B3 DNA binding domain
SMARTSM010192.3E-1943140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MRMDLSLGTL VEATREVQEE HQADLGHQDR REHGDAVERE HMFDKVLTPS DVGKLNRLVV  60
PKQHAERFFP EAGNGTQLCF EDRAGAPWRF RYSYWGSSQS YVMTKGWSLF VRAASLAAGD  120
TVSFSRGAGG RYFIDYRHCQ RRCQEISFGD TAAMSAWPWV QRTSSMTGGE GASATNPVLV  180
DTGPPGIRHH DAEVGPSRAK CFRLFGFNVE CSRDDDAAME DEEDVDDDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-42381373111B3 domain-containing transcription factor NGA1
5os9_B4e-42381373111B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046981e-102AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12.
GenBankAP0149641e-102AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-102CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822547.15e-88putative B3 domain-containing protein Os08g0157700
SwissprotQ7EZD51e-71Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700
TrEMBLA0A1E5WI633e-87A0A1E5WI63_9POAL; Putative B3 domain-containing protein
STRINGSb07g003880.11e-86(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.12e-45B3 family protein