PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00078.1.g00540.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 161aa    MW: 17513.6 Da    PI: 9.9676
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00078.1.g00540.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.31.6e-1673107135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C +C + kT +WR gp g+ktLCnaCG++y++ +l
  Zjn_sc00078.1.g00540.1.am.mk  73 CPHCASEKTQQWRTGPLGPKTLCNACGVRYKSGRL 107
                                   9******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-1467117IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.0E-1271104IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.24E-1371131No hitNo description
PROSITE profilePS5011410.10671103IPR000679Zinc finger, GATA-type
CDDcd002021.10E-1072119No hitNo description
PROSITE patternPS0034407398IPR000679Zinc finger, GATA-type
PfamPF003201.4E-1473107IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MASEWEAVDL GMGLVHHHTS NTTTMPPAPS PSSINHQAWQ RSKNKQNLPA APAAGGGGDD  60
PNSRSEDGGV RRCPHCASEK TQQWRTGPLG PKTLCNACGV RYKSGRLVPE YRPAASPTFV  120
LTQHSNSHRK VMELRRQKEL IHLRGTSSSA SSSPFRDYGL C
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574323.14e-49GATA transcription factor 2
TrEMBLA0A287Q1I02e-48A0A287Q1I0_HORVV; Uncharacterized protein
TrEMBLI1I6371e-47I1I637_BRADI; GATA transcription factor
STRINGBRADI3G33200.12e-48(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.15e-47GATA transcription factor 2