PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00078.1.g01500.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 142aa MW: 16186.1 Da PI: 9.122

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00078.1.g01500.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.1	1.3e-24	45	94	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ rqv fskRr+g++KKA+EL LCda+va+i+fs+ g+lye++s Zjn_sc00078.1.g01500.1.sm.mkhc 45 RIEDRVSRQVRFSKRRKGLFKKAFELAELCDAQVALIVFSPAGRLYEFAS 94 8***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.287	36	96	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.0E-30	36	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.7E-26	38	58	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.09E-25	38	97	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.71E-32	38	101	No hit	No description
Pfam	PF00319	1.1E-24	45	92	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.7E-26	58	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.7E-26	73	94	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MDAEEARNPE LRQREEEARA GGEGDGRNEM KKAAKKKRGR VEMRRIEDRV SRQVRFSKRR 60 KGLFKKAFEL AELCDAQVAL IVFSPAGRLY EFASSNSRVL EPNLNDLNVD ELREYTADEG 120 DRASSNSWLV MKSFGSSIKE GD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n6j_A	2e-16	38	112	2	84	Myocyte-specific enhancer factor 2B
1n6j_B	2e-16	38	112	2	84	Myocyte-specific enhancer factor 2B
1tqe_P	2e-16	38	112	3	85	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-16	38	112	3	85	Myocyte-specific enhancer factor 2B
1tqe_R	2e-16	38	112	3	85	Myocyte-specific enhancer factor 2B
1tqe_S	2e-16	38	112	3	85	Myocyte-specific enhancer factor 2B
6c9l_A	2e-16	38	112	3	85	Myocyte-specific enhancer factor 2B
6c9l_B	2e-16	38	112	3	85	Myocyte-specific enhancer factor 2B
6c9l_C	2e-16	38	112	3	85	Myocyte-specific enhancer factor 2B
6c9l_D	2e-16	38	112	3	85	Myocyte-specific enhancer factor 2B
6c9l_E	2e-16	38	112	3	85	Myocyte-specific enhancer factor 2B
6c9l_F	2e-16	38	112	3	85	Myocyte-specific enhancer factor 2B
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF469336	4e-31	KF469336.1 Brachypodium distachyon MADS-box transcription factor 42 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820080.1	2e-34	MADS-box transcription factor 51-like isoform X1
Refseq	XP_025820081.1	2e-34	MADS-box transcription factor 51-like isoform X1
Refseq	XP_025820082.1	2e-34	MADS-box transcription factor 51-like isoform X2
TrEMBL	A0A2T7D9Y5	3e-33	A0A2T7D9Y5_9POAL; Uncharacterized protein
STRING	Si014540m	4e-33	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	2e-26	AGAMOUS-like 20