PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00078.1.g03040.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 152aa    MW: 16203.1 Da    PI: 8.7301
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00078.1.g03040.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000144466123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C++C + F ++  L  H++ H
  Zjn_sc00078.1.g03040.1.am.mk 44 FSCTYCQRKFYSSQALGGHQNAH 66
                                  89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.4E-43969IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.15E-64171No hitNo description
PROSITE profilePS5015711.0534471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEKQPADDVN LDLRLIHSTE VVRGTVRHRH LARGAVAAEP DRTFSCTYCQ RKFYSSQALG  60
GHQNAHKLER SLAKRSRELS AVAIGAAISS ASASPSSELG NWFPAAAHAG DQAAAAAVVN  120
WIADGGRRYA YRVHAAAPVA GDADDIDLSL KL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039284e-53AP003928.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1150_A11.
GenBankAP0054804e-53AP005480.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0439B07.
GenBankAP0149644e-53AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126164e-53CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822138.19e-47zinc finger protein 36-like
TrEMBLA0A3L6RM721e-48A0A3L6RM72_PANMI; Zinc finger protein 1-like
STRINGPavir.Fb02284.1.p3e-49(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.17e-20zinc finger protein 2