PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00084.1.g00100.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 387aa    MW: 40847 Da    PI: 5.1658
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00084.1.g00100.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.16.7e-16150199355
                           AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   + GVr ++ +g+++AeIrd    + k +r++lg+f+++e Aa a+++a+ + +g
  Zjn_sc00084.1.g00100.1.am.mk 150 FIGVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFDSPEAAALAYDQAAFSVRG 199
                                   67******.**********32..2.24**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.588149207IPR001471AP2/ERF domain
SMARTSM003808.8E-32149213IPR001471AP2/ERF domain
PRINTSPR003671.4E-7150161IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-20150208IPR016177DNA-binding domain
CDDcd000183.50E-16150209No hitNo description
Gene3DG3DSA:3.30.730.102.7E-27150207IPR001471AP2/ERF domain
PfamPF008471.0E-11151199IPR001471AP2/ERF domain
PRINTSPR003671.4E-7173189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDPRLVGFGH VPTLMEPGPT QPSASLCSAF RQQPYTPASR NELACLNDPF YSMDPYASSC  60
MFSHPCTGEI SGLVESTAGG LDGGGDMQRL LDALMHDGHS EGSFDDDSAS ASCSEESSSS  120
AGNGNSNSST GVHDKEETKQ QQRSNDKQPF IGVRKRPWGK FAAEIRDSTR KGARVWLGTF  180
DSPEAAALAY DQAAFSVRGA AAVLNFPVDR VQDSLRALAL SSSTSAGAGS PVLALKSRHS  240
LRKRSPNKNK TRPRSEAASV APQQQQPCTG GGGVVELEDL GADYLDELLR VSSPTSGGSQ  300
GSRGGHQASC PRSESPAKYL EEEEKLAVKR AELSRQLRDA AADLFVVSQK IAPEEDEAAM  360
ADMADAIRGN KDASLKSDVA GGSSIAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-231502071572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130815.11e-62uncharacterized protein LOC100191919
TrEMBLB4FAN63e-61B4FAN6_MAIZE; Ethylene-responsive transcription factor 1B
TrEMBLK4JRR93e-61K4JRR9_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM2G123119_P015e-62(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-34ethylene response factor 1