PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00085.1.g00930.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 210aa    MW: 22629.1 Da    PI: 6.0216
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00085.1.g00930.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-1994143356
                             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                     y+G+r+++ +g+W+AeIrdp+    +  r ++g+f+ta eAa+a++a +++++g+
  Zjn_sc00085.1.g00930.1.sm.mkhc  94 YRGIRQRP-WGKWAAEIRDPV----KgVRLWIGTFDTAAEAARAYDAEARRIHGA 143
                                     9*******.**********75....44*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-3193156IPR001471AP2/ERF domain
PROSITE profilePS5103221.86593150IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-2094150IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-2894150IPR001471AP2/ERF domain
PRINTSPR003675.5E-1194105IPR001471AP2/ERF domain
PfamPF008472.6E-1194142IPR001471AP2/ERF domain
CDDcd000181.59E-1794150No hitNo description
PRINTSPR003675.5E-11116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MCGRATVLRP PARRRGLSLV GEDTGVLSDD GSEQWEAAFR DFVDSDSDSD GDTIVPLLPR  60
AFRTNGSTAS VKSNPTPAAA RLIRRMARRR GGPYRGIRQR PWGKWAAEIR DPVKGVRLWI  120
GTFDTAAEAA RAYDAEARRI HGARARTNCP PEASPTSTCL TSMAEAENSS DASAAPLELE  180
CCPDGVLDSL LAGFDDVSSS NSNYSLDRLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1990150263ATERF1
3gcc_A4e-1990150263ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XC341e-38A0A0D9XC34_9ORYZ; Uncharacterized protein
STRINGLPERR09G02840.12e-39(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3555234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.14e-17ERF family protein