PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00086.1.g00740.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 219aa    MW: 23978.5 Da    PI: 7.8633
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00086.1.g00740.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.3e-121154247
                                  SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  g++T+ Ed+ + +   ++G+  W+ Ia+ ++ gRt+  +k++w++ 
  Zjn_sc00086.1.g00740.1.am.mk 11 GNFTPAEDKVICEMYSKMGSC-WSVIAAQLP-GRTDLAIKNYWNST 54
                                  89*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-22261IPR009057Homeodomain-like
SuperFamilySSF466891.0E-15261IPR009057Homeodomain-like
PROSITE profilePS5129419.266559IPR017930Myb domain
SMARTSM007171.4E-11957IPR001005SANT/Myb domain
PfamPF002491.6E-101154IPR001005SANT/Myb domain
CDDcd001677.04E-91255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
LNYLRPGLKH GNFTPAEDKV ICEMYSKMGS CWSVIAAQLP GRTDLAIKNY WNSTLKKRFR  60
WVRTAARRRP RPSPTGSTSS DARTPAQDLQ LIVYSEESST AGSSCAKPVL PSSPTSAKAV  120
KLLAPVAAGR EPIEAVPVRA NAPVRTEQKP SVESLPLMTP TAPPPPADRR DHTDQSDEMA  180
MDIISMPMSP IPLGFMDLEL ACICGFDDID NFLPWFDGH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791626.16e-78myb-related protein Pp2-like
TrEMBLA0A3L6TU287e-78A0A3L6TU28_PANMI; Transcription factor RAX2-like
STRINGSi037244m7e-72(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.16e-23myb domain protein 87