PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00088.1.g00850.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family YABBY
Protein Properties Length: 199aa    MW: 21960.8 Da    PI: 7.9553
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00088.1.g00850.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY216.96.4e-6751673170
                           YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveee 80 
                                     ++  +e+vCyv+CnfCnt+lavsvP +s+++vvtvrCGhCt+llsvnl   + q l+ +++l+e+++++   +  ++++
  Zjn_sc00088.1.g00850.1.sm.mkhc   5 TMAPAEHVCYVHCNFCNTVLAVSVPGNSVLTVVTVRCGHCTNLLSVNLLGLAnQSLPQQEQLQENIRPQGIINGTSHDQ 83 
                                     56789******************************************97765489************997766655554 PP

                           YABBY  81 nlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
                                      +   +  ++s++ + +  ++ + e+ ++++   + rPPekrqrvPsaynr   eei+rika+nPdishreafs+aakn
  Zjn_sc00088.1.g00850.1.sm.mkhc  84 -FGHLEFGSSSSKFQLP--MMYSAENGHLQEHALATRPPEKRQRVPSAYNR---EEIRRIKANNPDISHREAFSTAAKN 156
                                     .5555555444444444..4555666666666778***************7...************************* PP

                           YABBY 160 WahfPkihfgl 170
                                     Wah+P+ihfgl
  Zjn_sc00088.1.g00850.1.sm.mkhc 157 WAHYPNIHFGL 167
                                     *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.6E-658167IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSAQTMAPAE HVCYVHCNFC NTVLAVSVPG NSVLTVVTVR CGHCTNLLSV NLLGLANQSL  60
PQQEQLQENI RPQGIINGTS HDQFGHLEFG SSSSKFQLPM MYSAENGHLQ EHALATRPPE  120
KRQRVPSAYN REEIRRIKAN NPDISHREAF STAAKNWAHY PNIHFGLSSP GREVGKKLVD  180
ETVAAVTTPD PTNKIQGFY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740184e-44AB274018.1 Oryza sativa Japonica Group OsYABBY6 mRNA for OsYABBY6 protein, complete cds.
GenBankAK1049184e-44AK104918.1 Oryza sativa Japonica Group cDNA clone:001-047-F07, full insert sequence.
GenBankCT8291394e-44CT829139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051K22, full insert sequence.
GenBankCT8300404e-44CT830040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA015F11, full insert sequence.
GenBankFJ9401954e-44FJ940195.1 Oryza sativa Japonica Group clone KCS385G10 YABBY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804908.14e-97protein YABBY 6-like isoform X2
SwissprotQ2QM172e-80YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A0A8Y1511e-104A0A0A8Y151_ARUDO; Uncharacterized protein
STRINGSb08g022030.16e-96(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.23e-53YABBY family protein