PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00088.1.g01220.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 283aa    MW: 29862.6 Da    PI: 9.176
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00088.1.g01220.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.34e-32241351100
                           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssss 69 
                                   aag+kdrhsk+ T++g+RdRRvRls+++a+rf+d+qd+LG+d++sk++ WL+ +a +ai++l+++            +   
  Zjn_sc00088.1.g01220.1.am.mk  24 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIRFYDVQDRLGVDQPSKAVAWLIGAAAAAIDALPSLdrssfalppavaD--- 101
                                   6899*************************************************************6555533332221... PP

                           TCP  70 asec.eaesssssasnsssg......kaaksaakskks 100
                                      + +a++++s+++  s+g      +a +++a +  +
  Zjn_sc00088.1.g01220.1.am.mk 102 ---AdDAGAEVSASE-TSKGsvlslvNAPAETAVPAAA 135
                                   ...122222222222.2222355554222222211111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.9E-3126138IPR005333Transcription factor, TCP
PROSITE profilePS5136930.5942785IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MERVVAAGME RAACKRPRAD LDAAAGGKDR HSKVVTARGL RDRRVRLSVP TAIRFYDVQD  60
RLGVDQPSKA VAWLIGAAAA AIDALPSLDR SSFALPPAVA DADDAGAEVS ASETSKGSVL  120
SLVNAPAETA VPAAAHQTNH AVHAYSGNAG GGGAFAQPLH CDATHDDKSM RQKGPPTLAY  180
YAAHTRSPYI TPARDLGTMP QLAFLHEEQQ QQPAVVFGRG ILQSNAVAAP LWPPAQQHSC  240
LLQRFTSADA AGLPFFLGGG AAPVTSSADR RVQFWNFKQE RKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-203286155Putative transcription factor PCF6
5zkt_B5e-203286155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1012152e-62FP101215.1 Phyllostachys edulis cDNA clone: bphylf044o06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963209.11e-101transcription factor PCF8
SwissprotA2ZMR99e-68PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A3L6T2891e-101A0A3L6T289_PANMI; Transcription factor PCF8
STRINGPavir.Ca02949.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-20TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2