PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00088.1.g01490.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LSD
Protein Properties Length: 63aa    MW: 6473.5 Da    PI: 7.3415
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00088.1.g01490.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD144.52.5e-14731125
                         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                    C+gCr lL YPrGApsV+Ca+C++V
  Zjn_sc00088.1.g01490.1.sm.mkhc  7 CHGCRSLLLYPRGAPSVCCAVCHAV 31
                                    ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010539.4E-14434IPR005735Zinc finger, LSD1-type
PfamPF069435.2E-12731IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MQSQIVCHGC RSLLLYPRGA PSVCCAVCHA VTSVPPPDAH VATQSILSDK VSNVVVGVTT  60
GDP
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805781.16e-19protein LOL2-like isoform X2
SwissprotQ2QMB37e-16LOL2_ORYSJ; Protein LOL2
TrEMBLA0A2S3HFC72e-17A0A2S3HFC7_9POAL; Uncharacterized protein
TrEMBLA0A2T7EJ692e-17A0A2T7EJ69_9POAL; Uncharacterized protein
STRINGBRADI4G02040.11e-17(Brachypodium distachyon)
STRINGPavir.Cb00222.1.p3e-18(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2222047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-16lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]