PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00090.1.g00790.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

CAMTA

Protein Properties

Length: 452aa MW: 50839 Da PI: 5.9777

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00090.1.g00790.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	56.7	4.8e-18	52	95	74	117
CG-1 74 KvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117 +vg+v++l+cyYah+e+np fqrrc+w+Le ++e+ivlv+y++v Zjn_sc00090.1.g00790.1.sm.mkhc 52 RVGNVDALSCYYAHGEQNPCFQRRCFWMLEPAYEHIVLVQYRDV 95 699***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	26.289	1	101	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.7E-20	10	96	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.4E-13	52	95	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF48403	4.97E-14	114	191	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.186	117	189	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.3E-14	117	190	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.97E-13	118	189	No hit	No description
PROSITE profile	PS50088	10.766	130	162	IPR002110	Ankyrin repeat
SMART	SM00248	5.2E-4	130	159	IPR002110	Ankyrin repeat
Pfam	PF13637	1.3E-5	132	188	No hit	No description
SMART	SM00248	2800	169	198	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	7.602	251	280	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MSESFDINVL REEARTRWLR PAEVYYILQN HERFPITPEP PKKPPSIAHI PRVGNVDALS 60 CYYAHGEQNP CFQRRCFWML EPAYEHIVLV QYRDVAEPSG SAKNVEAAGF EWALSSVLSA 120 GVGINFRDSN GWTALHWAAY FGREKMVATI LAAGASATAV TDPTAQDPVG KTAAFLASER 180 GHMGLAGYLS EVSLTSHLAS LTIEESEISK GSAAVEAERA VESISQRSAK RQGGTEDELS 240 MKDSLAAVRN AAQAAARIQN AFRAFSFRKR QQKTARLRDE YGMTQEDIDE LAAAAASRSY 300 HQNHALNGQF YNKAAAHVRG HQVRKKYKTF VSTVSVLEKV ILRWRRRRQG LRGFRAEQPT 360 MIVAEEEEEE EEDDDDVDFE DDEATRMFRR QKVDEALKEA VSRVLFMVES PEARMQYRRM 420 LEEFRQATAE LGGSEVTSLF NSELVGLDSF MH

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MSESFDINVL REEARTRWLR PAEVYYILQN HERFPITPEP PKKPPSIAHI PRVGNVDALS  60
CYYAHGEQNP CFQRRCFWML EPAYEHIVLV QYRDVAEPSG SAKNVEAAGF EWALSSVLSA  120
GVGINFRDSN GWTALHWAAY FGREKMVATI LAAGASATAV TDPTAQDPVG KTAAFLASER  180
GHMGLAGYLS EVSLTSHLAS LTIEESEISK GSAAVEAERA VESISQRSAK RQGGTEDELS  240
MKDSLAAVRN AAQAAARIQN AFRAFSFRKR QQKTARLRDE YGMTQEDIDE LAAAAASRSY  300
HQNHALNGQF YNKAAAHVRG HQVRKKYKTF VSTVSVLEKV ILRWRRRRQG LRGFRAEQPT  360
MIVAEEEEEE EEDDDDVDFE DDEATRMFRR QKVDEALKEA VSRVLFMVES PEARMQYRRM  420
LEEFRQATAE LGGSEVTSLF NSELVGLDSF MH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823461.1	1e-158	calmodulin-binding transcription activator 4-like isoform X3
Swissprot	Q9FYG2	4e-86	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A287IC38	1e-158	A0A287IC38_HORVV; Uncharacterized protein
STRING	MLOC_58709.1	1e-154	(Hordeum vulgare)
STRING	Si009249m	1e-154	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6238	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	2e-61	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]