PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00092.1.g01850.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

YABBY

Protein Properties

Length: 134aa MW: 14976 Da PI: 10.8443

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00092.1.g01850.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	74.8	2.9e-23	53	88	135	170
YABBY 135 eeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +eiqrika+nPdishreafsaaaknWahfP+ihfgl Zjn_sc00092.1.g01850.1.am.mk 53 DEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 88 69********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.4E-21	53	88	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MLCVTRGAQA TVCWFSRPRQ RRRPRWRQQD RAGTPGPGGR SESFCRGRES PLDEIQRIKA 60 GNPDISHREA FSAAAKNWAH FPHIHFGLMP DHHGLKKTNL LPQEYQRKDG LLKEGLYTAA 120 AAAAAAANMG VTPY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	26	RPRQRRRPRWR
2	20	27	RRRPRWRQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP091994	1e-77	FP091994.1 Phyllostachys edulis cDNA clone: bphyem110b24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613818.1	5e-42	protein YABBY 3 isoform X1
Refseq	XP_025876472.1	3e-42	protein YABBY 3 isoform X2
Swissprot	Q8L556	4e-43	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	B8BHT1	5e-43	B8BHT1_ORYSI; Uncharacterized protein
TrEMBL	B9G6J8	2e-41	B9G6J8_ORYSJ; Uncharacterized protein
STRING	OGLUM10G15140.1	2e-41	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	1e-31	YABBY family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]