PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00092.1.g02030.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WOX

Protein Properties

Length: 205aa MW: 23038.7 Da PI: 5.7912

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00092.1.g02030.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.8	1.1e-10	61	106	2	42
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLter 42 r+R+++t+ ql++Le+ F + n +ps+ +++e+A++l +++e+ Zjn_sc00092.1.g02030.1.sm.mk 61 RQRWQPTPMQLQVLENIFDQgNGTPSKPKIKEIAAELshhgQISET 106 89***************99**************777777766 PP
2	Wus_type_Homeobox	59.3	9.1e-20	60	107	2	49
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkN 49 +r+RW Ptp Q+++Le+++++G tP+k +i++i+aeL+++G+i+++N Zjn_sc00092.1.g02030.1.sm.mk 60 TRQRWQPTPMQLQVLENIFDQGNGTPSKPKIKEIAAELSHHGQISETN 107 689*******************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-6	55	106	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.48E-7	60	100	IPR009057	Homeodomain-like
Pfam	PF00046	2.1E-8	61	106	IPR001356	Homeobox domain
CDD	cd00086	1.57E-4	61	97	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MTDEQVEVLR TQISVHATIC EQLVEMHRAL TEHQDSISGM MFSDLYCDPL VVPGRHKIST 60 RQRWQPTPMQ LQVLENIFDQ GNGTPSKPKI KEIAAELSHH GQISETNTAR SKRKQAASLP 120 NNAESEAEAD EESLTDKKPK SDRPFLHNTD RISEMHHFKT EQNQMGDMIY GSSDNLRSSG 180 NPGQMSVYDN IVSNPSTFAG LYLVT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970378.1	1e-110	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	2e-85	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1E5V6G7	1e-110	A0A1E5V6G7_9POAL; WUSCHEL-related homeobox 8
STRING	Si002508m	1e-109	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-44	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]