PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00093.1.g01410.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 185aa MW: 20760.8 Da PI: 4.886

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00093.1.g01410.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	77	2.7e-24	2	85	11	94
NF-YB 11 anvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 + v+rim+ +lP+n+ki d+k+ +++c+ ef + +t ea+ ++e r+ ++gdd++ al+ +Gf dyv+pl++ l++y e Zjn_sc00093.1.g01410.1.am.mk 2 TAVTRIMHCALPQNSKINADTKDAMNQCILEFTARLTHEAAWVGKEESRRMMSGDDIILALGRMGFSDYVDPLTLLLQRYCES 84 679*****************************************************************************987 PP NF-YB 94 e 94 + Zjn_sc00093.1.g01410.1.am.mk 85 Q 85 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	2.5E-10	1	62	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	6.0E-21	3	101	IPR009072	Histone-fold
SuperFamily	SSF47113	1.26E-17	3	86	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MTAVTRIMHC ALPQNSKINA DTKDAMNQCI LEFTARLTHE AAWVGKEESR RMMSGDDIIL 60 ALGRMGFSDY VDPLTLLLQR YCESQGIMPR GWQTELASQE PMSSSQVVVE QQLQAAMPTV 120 GVELQPPEPD LTLGLALPAP RHVTELELHE EVYKAWPRPA GPMATNELFY AEVNPQRKKS 180 NERIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	2e-17	4	81	14	91	NF-YB
4awl_B	2e-17	4	81	15	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-17	4	81	15	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14056	13	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47640.1	2e-21	nuclear factor Y, subunit B2