PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00093.1.g01780.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 24475.9 Da    PI: 9.905
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00093.1.g01780.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.55.6e-2675125151
                                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                     krie++ nrqvtfskRr+g++KKA+EL +LCda++ vi+f  tg+ly++ss
  Zjn_sc00093.1.g01780.1.am.mkhc  75 KRIESEANRQVTFSKRRAGVFKKAKELATLCDAQIGVIVFTDTGQLYDFSS 125
                                     79***********************************************96 PP
2K-box14.91.1e-061311735798
                           K-box  57 qLekslkkiR.skKnellleqieelqkkekelqeenkaLrkkl 98 
                                     +Le ++++   +  ++ ll+qie+  kk   +++en++L++k+
  Zjn_sc00093.1.g01780.1.am.mkhc 131 KLEAGITQLAtESEEQTLLDQIEQFNKKASIMNNENEELKRKI 173
                                     78999998862567899************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.52567127IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-2567132IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-3467126IPR002100Transcription factor, MADS-box
CDDcd002651.92E-3068126No hitNo description
PRINTSPR004049.3E-246989IPR002100Transcription factor, MADS-box
PROSITE patternPS00350069123IPR002100Transcription factor, MADS-box
PfamPF003197.4E-2476123IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-2489104IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-24104125IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
TDVQPPPFSI LPGLHLERFL PPLQDPRELE STAHLSLSLS GSSPGLSHFS LLSKSLPATG  60
GLKLGVMGRG KTVLKRIESE ANRQVTFSKR RAGVFKKAKE LATLCDAQIG VIVFTDTGQL  120
YDFSSSRRGR KLEAGITQLA TESEEQTLLD QIEQFNKKAS IMNNENEELK RKISIVRQEN  180
NNLKEIYTNL TGKKWSQKMD QHWTFVCIDY YKSYKQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-1667158191MEF2C
5f28_B3e-1667158191MEF2C
5f28_C3e-1667158191MEF2C
5f28_D3e-1667158191MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020962192.13e-32MADS-box transcription factor 27 isoform X7
RefseqXP_025668876.13e-32MADS-box transcription factor 27 isoform X7
SwissprotQ6EP496e-25MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1E5VGQ18e-33A0A1E5VGQ1_9POAL; MADS-box transcription factor 27
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3566034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.19e-27AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]