PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00093.1.g01800.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 87aa MW: 9707.55 Da PI: 10.8134

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00093.1.g01800.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.7	5.4e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+ nrqvtfskRr+g++KKA+ LS+LCda++ vi+f +tg+ly++ss Zjn_sc00093.1.g01800.1.sm.mk 9 KRIENEANRQVTFSKRRAGMFKKAKGLSILCDAQIGVIVFTNTGQLYDFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.44E-24	1	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	27.824	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-33	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-25	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.8E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MVRGKTVLKR IENEANRQVT FSKRRAGMFK KAKGLSILCD AQIGVIVFTN TGQLYDFSSS 60 RLCCVWFVGP IKQIVIASKN VISDIVI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269\|PubMed:17704216, ECO:0000269\|PubMed:24876250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269\|PubMed:18579782}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013457660.1	2e-26	agamous-like MADS-box protein AGL19 isoform X1
Refseq	XP_024638693.1	2e-26	agamous-like MADS-box protein AGL19 isoform X1
Swissprot	A2RVQ5	1e-23	AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBL	A0A0D3GGC5	4e-26	A0A0D3GGC5_9ORYZ; Uncharacterized protein
STRING	Pavir.Da00991.1.p	5e-28	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.2	4e-26	AGAMOUS-like 16

Publications ? help Back to Top
Yang K,Jiang M,Le J A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell. J Integr Plant Biol, 2014. 56(6): p. 539-49 [PMID:24386951]