PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00095.1.g00260.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 349aa MW: 37487.7 Da PI: 10.5577

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00095.1.g00260.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.7	1.3e-13	55	99	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky Zjn_sc00095.1.g00260.1.sm.mkhc 55 PWTEEEHRTFLVGLEKLGKGDWRGIAKIFVTTRTPTQVASHAQKY 99 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.96	48	104	IPR017930	Myb domain
SMART	SM00717	6.8E-10	52	102	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.53E-17	53	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-17	54	103	IPR006447	Myb domain, plants
Pfam	PF00249	9.9E-12	55	99	IPR001005	SANT/Myb domain
CDD	cd00167	1.48E-9	55	100	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-10	55	98	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MRLFGVTIAP APEVDPSSQD PSPNPPLAAR EDVMRKCKSM GNLAAVAAAS VDAVPWTEEE 60 HRTFLVGLEK LGKGDWRGIA KIFVTTRTPT QVASHAQKYF LRQTNPNKKK RRSSLFDMMP 120 GDALPVPNCH ILPSSGTKVH DVVAMSKQLQ NSKLEVVSSS NTGNVESRVE RNLPPIPPFK 180 PTSKDSSFSK LNLMERWRTP FPFRPIPRGL EGTSSIPATA NIATMATSSI PATANIATMT 240 SETNMAECAT AFLGPKIDPS SPSLPGAGYP EEKKDLELTF GPPSQQNMTN ISSKNALSSS 300 LRLLSFDLDP LIGEARARCR GRSSGEAGTR SLRTSHGKAG AGGRGRRPG

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MRLFGVTIAP APEVDPSSQD PSPNPPLAAR EDVMRKCKSM GNLAAVAAAS VDAVPWTEEE  60
HRTFLVGLEK LGKGDWRGIA KIFVTTRTPT QVASHAQKYF LRQTNPNKKK RRSSLFDMMP  120
GDALPVPNCH ILPSSGTKVH DVVAMSKQLQ NSKLEVVSSS NTGNVESRVE RNLPPIPPFK  180
PTSKDSSFSK LNLMERWRTP FPFRPIPRGL EGTSSIPATA NIATMATSSI PATANIATMT  240
SETNMAECAT AFLGPKIDPS SPSLPGAGYP EEKKDLELTF GPPSQQNMTN ISSKNALSSS  300
LRLLSFDLDP LIGEARARCR GRSSGEAGTR SLRTSHGKAG AGGRGRRPG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	111	KKKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001339748.1	1e-120	uncharacterized protein LOC110467540
TrEMBL	A0A1E5VMR7	1e-125	A0A1E5VMR7_9POAL; Transcription factor DIVARICATA
STRING	GRMZM2G108892_P01	1e-119	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5858	36	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	6e-34	MYB_related family protein