PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00095.1.g00690.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 340aa    MW: 35923.7 Da    PI: 5.7176
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00095.1.g00690.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.87.7e-082823152154
                                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  Zjn_sc00095.1.g00690.1.sm.mkhc 282 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 315
                                     469*****************************87 PP
2ELK26.71.3e-09236257122
                             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                     ELKh+L+++Y+++L+++++E++
  Zjn_sc00095.1.g00690.1.sm.mkhc 236 ELKHELKQGYKEKLIDIREEIL 257
                                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-19110154IPR005540KNOX1
PfamPF037904.2E-18113153IPR005540KNOX1
SMARTSM011880.004236257IPR005539ELK domain
PROSITE profilePS5121310.039236256IPR005539ELK domain
PROSITE profilePS5007111.742256319IPR001356Homeobox domain
SuperFamilySSF466894.28E-16258322IPR009057Homeodomain-like
SMARTSM003895.1E-11258323IPR001356Homeobox domain
CDDcd000861.60E-12259320No hitNo description
Gene3DG3DSA:1.10.10.603.5E-25263320IPR009057Homeodomain-like
PfamPF059208.8E-18276315IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAFHGHHLPH EMSSMPHLGV DDAAVAAAAA AAAAAAGGAG GAPPPAWMRY GDGSFLHLQT  60
TSDSSASPSS AAAAAVQHWN MGAGEDAVAA MGGCGGVVVG AAEPTEADAA RSKAEILAHP  120
LYEQLLSAHV ACLRVATPVD QLPRIDAQLE QSQGVVAKYS GLAAAAGDDA GRGEIDHTLT  180
GASPGEGTGA TMSDGEDDQA DSDANMYDPS LDGPDNMGFG LPTESERSLM ERVRQELKHE  240
LKQGYKEKLI DIREEILRKR RAGKLPGDTT STLKAWWQSH SKWPYPTEED KARLVQETGL  300
QLKQINNWFI NQRKRNWHSN PSSSANVKTK RKSNAGDSTS
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973169.11e-159homeobox protein knotted-1-like 13 isoform X1
SwissprotQ0J6N41e-160KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A0E0LTE41e-160A0A0E0LTE4_ORYPU; Uncharacterized protein
STRINGOPUNC08G08730.11e-160(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-121KNOTTED1-like homeobox gene 3