PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00096.1.g00300.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 156aa    MW: 17050.3 Da    PI: 10.4667
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00096.1.g00300.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000544466123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C  Cg++F +   L  H  +H
  Zjn_sc00096.1.g00300.1.sm.mk 44 FQCRTCGRRFATFQALGGHRTSH 66
                                  89**********99998888777 PP
2zf-C2H217.98.5e-0695117123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ Cg++F++   L  H+r+H
  Zjn_sc00096.1.g00300.1.sm.mk  95 HRCNTCGTVFPTGQALGGHMRRH 117
                                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.3E-94368IPR007087Zinc finger, C2H2
SMARTSM003550.194466IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6994471IPR007087Zinc finger, C2H2
SuperFamilySSF576678.82E-844117No hitNo description
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
PfamPF139122.5E-1294119IPR007087Zinc finger, C2H2
SMARTSM003550.01695117IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.03495122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDHTTSRTTT NFLQLLSLSL SPASKSKVIL KGKTTRRVRL DGAFQCRTCG RRFATFQALG  60
GHRTSHKRPR VRADGLDLLL GARPGKASAA CRNVHRCNTC GTVFPTGQAL GGHMRRHRAA  120
EEFDAPALET ASSGLSEDGD DHDDEDIVPR TLIHFI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340455e-40AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence.
GenBankAK0624915e-40AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence.
GenBankAK1052265e-40AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence.
GenBankAP0149675e-40AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankAY3058665e-40AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds.
GenBankCP0126195e-40CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
GenBankCT8333225e-40CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980041.12e-51zinc finger protein ZAT12
TrEMBLA0A368SBJ94e-50A0A368SBJ9_SETIT; Uncharacterized protein
STRINGSi027432m7e-51(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.15e-23C2H2 family protein