PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00100.1.g00500.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 204aa    MW: 22754.2 Da    PI: 11.3908
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00100.1.g00500.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.2e-06991381554
                                   HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   +i +  ++L+ llP+a   +s ++  a +L++++ YI+sL
  Zjn_sc00100.1.g00500.1.am.mk  99 QISDLVAKLQALLPEARLRSSDRVPSARVLQETCSYIRSL 138
                                   789999*********8899999****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.65584138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-798162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-698152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MLPDRSELME RDMPTLSCQA PRDSGRGRQR IRLRPPAAGA VVGTLLTPDR CPLLDSFYTQ  60
CLVLPTRQPP RPAGEGSEMS SRRPRSRASG GAARISDEQI SDLVAKLQAL LPEARLRSSD  120
RVPSARVLQE TCSYIRSLHR EVDDLSDRLS ELLATSDVST VQVAIIRSLL MPRPTSRERR  180
RARSRWPAAL PARVTLCMQW TSLT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1014781e-84FP101478.1 Phyllostachys edulis cDNA clone: bphyst014m19, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26753378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-31bHLH family protein