PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00105.1.g00380.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 220aa    MW: 22412.5 Da    PI: 6.2358
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00105.1.g00380.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.82e-08192218430
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                                      h ++ErrRR++iN++f eL +++P +
  Zjn_sc00105.1.g00380.1.sm.mkhc 192 DHIIAERRRREKINQRFIELSTVIPGL 218
                                     5999*********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.353188220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.11E-7189219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-8192218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.16E-7193220No hitNo description
PfamPF000107.8E-6193218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MNRDMDDSSM FLLWAMNQLH GQHPAAAAAA GAPEYPDGDG GSGGTGDREA TFPSLQALRN  60
ASQPDQTAAA AAAVRVLDLT VQVDHQTSNS WTSGDSPGAA MDYDAAAGWS PHTARARTAG  120
LGGGGNRSVS WNFSAASAQP TDEGGQAGDV ALPDAATAAR APHASTMGRR GGSSGPVAAA  180
AAGSSSPGPV QDHIIAERRR REKINQRFIE LSTVIPGLKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201ERRRRE
2197202RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808672.13e-79transcription factor bHLH25-like
RefseqXP_025808673.13e-79transcription factor bHLH25-like
RefseqXP_025808674.13e-79transcription factor bHLH25-like
RefseqXP_025808675.13e-79transcription factor bHLH25-like
TrEMBLA0A2T7EJP43e-80A0A2T7EJP4_9POAL; Uncharacterized protein
STRINGPavir.Ca02967.1.p1e-71(Panicum virgatum)
STRINGSb08g022760.11e-70(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.28e-10bHLH family protein