PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00105.1.g00730.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family YABBY
Protein Properties Length: 133aa    MW: 14725.8 Da    PI: 10.2352
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00105.1.g00730.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY96.94.6e-301212622137
                           YABBY  22 lavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                                     + vsvP +s+++vvtvrCGhCt+llsvnl   + q l+ ++hl+e+++++ + +  +++++++  +  ++ +s++ +  
  Zjn_sc00105.1.g00730.1.sm.mkhc  12 MQVSVPGNSVLTVVTVRCGHCTNLLSVNLLGLThQSLPQQEHLQENIRPQGTING-TSRDQFDHLEFGSS-SSAKFRLP 88 
                                     679*************************976552889**********99855443.34444555544443.34444555 PP

                           YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeei 137
                                     ++ + +++ ++++  + r PekrqrvPsaynrfi   i
  Zjn_sc00105.1.g00730.1.sm.mkhc  89 MMYSAQNDLLQEQALAARAPEKRQRVPSAYNRFINGHI 126
                                     56555555555556699*****************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-2712126IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MVGNKRTKVI SMQVSVPGNS VLTVVTVRCG HCTNLLSVNL LGLTHQSLPQ QEHLQENIRP  60
QGTINGTSRD QFDHLEFGSS SSAKFRLPMM YSAQNDLLQE QALAARAPEK RQRVPSAYNR  120
FINGHIIQTS ILG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442565.13e-47protein YABBY 6
SwissprotQ2QM173e-31YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A0A8Y1511e-47A0A0A8Y151_ARUDO; Uncharacterized protein
STRINGSb08g022030.11e-46(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-20YABBY family protein