PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00105.1.g01420.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LSD

Protein Properties

Length: 59aa MW: 6291.14 Da PI: 6.2337

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00105.1.g01420.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	34.6	3.2e-11	7	26	1	20
zf-LSD1 1 CggCrtlLsYPrGApsVRCa 20 C+gCr lL YPrGApsV+Ca Zjn_sc00105.1.g01420.1.sm.mkhc 7 CNGCRSLLLYPRGAPSVCCA 26 *******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	4.7E-9	4	26	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.7E-9	7	26	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 59 aa Download sequence Send to blast
MQGQIVCNGC RSLLLYPRGA PSVCCAPTNR SQNVTVVVEN PMTVGENGDG SFVNVKDYT

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22220	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	1e-08	lsd one like 1