PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00106.1.g01220.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 367aa    MW: 40272 Da    PI: 10.0994
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00106.1.g01220.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-19235284255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +++GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAaka+++a+ +++g
  Zjn_sc00106.1.g01220.1.am.mk 235 RFRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAAKAYDRAAVEFRG 284
                                   69*******.**********82....48***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.658235292IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-22235293IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-30235292IPR001471AP2/ERF domain
SMARTSM003801.8E-36235298IPR001471AP2/ERF domain
PfamPF008478.6E-13235284IPR001471AP2/ERF domain
PRINTSPR003671.6E-10236247IPR001471AP2/ERF domain
CDDcd000187.19E-27238292No hitNo description
PRINTSPR003671.6E-10258274IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MSSVNSRDAT PLAFTLPRIQ LEAKTGIRKK TEDGRRARFS RLSRALSTQR PRYSPRPLRR  60
DPRIKAPAPP ASSRSIQASA TTRNADNRMT NRTFLPSPSM AASAANQDYV IRFDGQFDDP  120
SPSSSSGHEP PPPPFAWRPI TPEREHAVIV AALLHVVSGY TTPPPEVFPA AQVEASTSCR  180
VCGMERCLGC EFFAADTFSA GADTAENAVV TAAATTTAGA GGTGTQRRRR KKKNRFRGVR  240
QRPWGKWAAE IRDPRRAVRK WLGTFDTAEE AAKAYDRAAV EFRGPRAKLN FPFPEHQAAL  300
TTAHDAAAAK SSDTQSPCSA DVEDRSGPQD WAPRGGEEAG ELWDDLQDLM RLDEGEIWFP  360
PTSTPWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20232293264ATERF1
3gcc_A3e-20232293264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226232RRRRKKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9644534e-67EU964453.1 Zea mays clone 278992 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973673.11e-110ethylene-responsive transcription factor ERF109
TrEMBLK3YJ181e-108K3YJ18_SETIT; Uncharacterized protein
STRINGSi014237m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.17e-18redox responsive transcription factor 1