PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00112.1.g01060.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 468aa    MW: 52383.4 Da    PI: 10.5259
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00112.1.g01060.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.58.8e-123974661792
                                   E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                            B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                    lp  f++++  k  ++  +tl de  ++++  +     +++  l++GW++F+ +++L +gD vvF+l+++++f+ 
  Zjn_sc00112.1.g01060.1.am.mk 397 GLPVGFCRKYLPK--RDERITLVDEADEEFDTLYL--APKRG--LSAGWRGFAVDHELVDGDCVVFELVEQTKFKV 466
                                   69********433..4557***************4..44444..9**********************998777744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-15343359IPR015300DNA-binding pseudobarrel domain
CDDcd100178.13E-19344468No hitNo description
SMARTSM010199.1E-5380467IPR003340B3 DNA binding domain
PROSITE profilePS5086310.109381468IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-15396467IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-9397466IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-15397467IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
PSPLDLTLGR QRPSAAAPDC QLSFARGYRR GYCRSSPAAP LASRVSSLVK ISIHSHRSPH  60
PFLLSKVSAG AEFKFESVAV RLPPRCTLCI HLSGPTKPQR DGQGRRFMNR VHKPRTPTPS  120
FSLAVRPIQL LCYAFCSPSK PAHPRNRKRW DSERGRSMAD AASYEEQRRR LIEANKRKLE  180
ELQLHHLSAA VRDAASGMLS PVGPASLYLP LFLLLQRSFI SAAAVGLLSS SDLGLVRQAK  240
KRKLRVPRHA AGEEAEPLRR SGRVASIPEK PNYRDVRACV PICVFINRST CAQVVPDFER  300
RIRRSSGRGR RRDLDNRVYA TEEERTYAIT KAEEVAQGLG SGFPSFVKPM TQSHVTGGFW  360
LVKSWRLLPI TSCCRFPLSF TSVEVDISFG GLMELQGLPV GFCRKYLPKR DERITLVDEA  420
DEEFDTLYLA PKRGLSAGWR GFAVDHELVD GDCVVFELVE QTKFKVTF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972573.16e-90B3 domain-containing protein Os06g0194400
SwissprotQ69V367e-86Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A1E5W1532e-92A0A1E5W153_9POAL; B3 domain-containing protein
STRINGSi014404m6e-89(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-41B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]