PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00118.1.g00470.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 162aa MW: 17140.4 Da PI: 7.781

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00118.1.g00470.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	105.6	8.1e-33	48	116	5	73
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++++ ++hTkv gR+RRvR+++ +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++ Zjn_sc00118.1.g00470.1.sm.mk 48 RRTSADRHTKVAGRGRRVRIPVMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPEEAP 116 67889********************************************************77776333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.5E-27	51	113	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.321	51	105	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MSSPSEIVLY NVVPTQTLNP APATAADLSV SASAPQPQQQ IPVRGRGRRT SADRHTKVAG 60 RGRRVRIPVM VAARVFQLTR ELGHRTDGET IEWLLRQAEP SIIAATGTGV TPEEAPPAAV 120 PVAGSAAAPY MPVPYYTSLL MQPPPVEESA ASASVTNAEE NH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823176.1	1e-66	transcription factor PCF1-like
Swissprot	O23875	9e-57	PCF1_ORYSJ; Transcription factor PCF1
TrEMBL	A0A3L6Q550	2e-66	A0A3L6Q550_PANMI; Transcription factor PCF1-like
STRING	BRADI5G02880.1	3e-65	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14172	26	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	6e-30	TCP family protein